Two things have changed versus before. One thing, techs got special training back when the tranny recall was going on. For example, the guy who did mine also headed-up the work for all the bikes in the Phoenix area. They rented a warehouse space and set-up just for this work. He flew to SoCal for training so he could manage the work, and that allowed the group to work very fast. Second, these model year bikes now have many more miles on them today versus back then.
So maybe the tech realizes he won't be able to work as fast but the recall$ they get from Yami is fixed, and also maybe the tech feels he needs to (for example) hone the cylinder walls to protect the new rings, that's about fifteen minutes. You might ask him if they will hone. If not, maybe there's something else he needs to cover. Like others, I don't see any extra steps needed, but if it were me I would want the cylinders honed based on mileage and age.
BTW I'd also think about new piston pins to connect the new HC pistons to the existing connecting rods, just in case.