Based on your last gallery photo there is an unfinished hidden rear caliper bracket 
Is this your configuration ... ? and if so have you made any modification to the stock rear swing arm on the inside right side to clear the caliper body and or the brake line banjo interference?
The Master Cylinder (MC) pushrod adjustment @ the piston must have a slight amount of freeplay for proper operation. Once again, The Master Cylinder pushrod adjustment must have a slight amount of freeplay for proper operation else the brake fluid is unable to return to the MC reservoir.
This is very important for bleeding and also for fluid expansion when the brakes heat up. If not properly adjusted the brakes will LOCK-UP 